Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar
Identifieur interne : 001832 ( Main/Exploration ); précédent : 001831; suivant : 001833Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar
Auteurs : Norosoa H. Razanajatovo ; Lalaina A. Nomenjanahary ; David A. Wilkinson [France] ; Julie H. Razafimanahaka [Madagascar] ; Steven M. Goodman [Madagascar] ; Richard K. Jenkins ; Julia Pg Jones ; Jean-Michel HeraudSource :
- Virology Journal [ 1743-422X ] ; 2015.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Coronaviridae.
- isolement et purification : Coronaviridae.
- médecine vétérinaire : Infections à Coronaviridae.
- virologie : Chiroptera.
- Animaux, Coronaviridae, Gènes viraux, Géographie, Madagascar, Phylogénie, Variation génétique.
- Wicri :
- geographic : Madagascar.
- topic : Chiroptera.
English descriptors
- KwdEn :
- MESH :
- geographic : Madagascar.
- classification : Coronaviridae.
- genetics : Coronaviridae.
- isolation & purification : Coronaviridae.
- veterinary : Coronaviridae Infections.
- virology : Chiroptera.
- Animals, Genes, Viral, Genetic Variation, Geography, Phylogeny.
- mix :
Abstract
Bats are amongst the natural reservoirs of many coronaviruses (CoVs) of which some can lead to severe infection in human. African bats are known to harbor a range of pathogens (e.g., Ebola and Marburg viruses) that can infect humans and cause disease outbreaks. A recent study in South Africa isolated a genetic variant closely related to MERS-CoV from an insectivorous bat. Though Madagascar is home to 44 bat species (41 insectivorous and 3 frugivorous) of which 34 are endemic, no data exists concerning the circulation of CoVs in the island’s chiropteran fauna. Certain Malagasy bats can be frequently found in close contact with humans and frugivorous bats feed in the same trees where people collect and consume fruits and are hunted and consumed as bush meat. The purpose of our study is to detect and identify CoVs from frugivorous bats in Madagascar to evaluate the risk of human infection from infected bats.
Frugivorous bats belonging to three species were captured in four different regions of Madagascar. We analyzed fecal and throat swabs to detect the presence of virus through amplification of the RNA-dependent RNA polymerase (RdRp) gene, which is highly conserved in all known coronaviruses. Phylogenetic analyses were performed from positive specimens.
From 351 frugivorous bats, we detected 14 coronaviruses from two endemic bats species, of which 13 viruses were identified from
Our findings suggest that CoVs circulate in frugivorous bats of Madagascar, demonstrating the needs to evaluate spillover risk to human populations especially for individuals that hunt and consume infected bats. Possible dispersal mechanisms as to how coronaviruses arrived on Madagascar are discussed.
Url:
DOI: 10.1186/s12985-015-0271-y
PubMed: 25888853
PubMed Central: 4404003
Affiliations:
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Nomenjanahary</name><affiliation><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.418511.8</institution-id><institution-id institution-id-type="ISNI">0000000405527303</institution-id><institution>Virology Unit, Institut Pasteur of Madagascar,</institution></institution-wrap>Ambatofotsikely, BP 1274 Antananarivo Madagascar, Dummy_Only</nlm:aff><wicri:noCountry code="subfield">Dummy_Only</wicri:noCountry></affiliation></author><author><name sortKey="Wilkinson, David A" sort="Wilkinson, David A" uniqKey="Wilkinson D" first="David A" last="Wilkinson">David A. 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Jenkins</name><affiliation><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.7362.0</institution-id><institution-id institution-id-type="ISNI">0000000118820937</institution-id><institution>School of Environment, Natural Resources and Geography,</institution><institution>Bangor University,</institution></institution-wrap>Bangor, Gwynedd United Kingdom</nlm:aff><wicri:noCountry code="subfield">Gwynedd United Kingdom</wicri:noCountry></affiliation></author><author><name sortKey="Jones, Julia Pg" sort="Jones, Julia Pg" uniqKey="Jones J" first="Julia Pg" last="Jones">Julia Pg Jones</name><affiliation><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.7362.0</institution-id><institution-id institution-id-type="ISNI">0000000118820937</institution-id><institution>School of Environment, Natural Resources and Geography,</institution><institution>Bangor University,</institution></institution-wrap>Bangor, Gwynedd United Kingdom</nlm:aff><wicri:noCountry code="subfield">Gwynedd United Kingdom</wicri:noCountry></affiliation></author><author><name sortKey="Heraud, Jean Michel" sort="Heraud, Jean Michel" uniqKey="Heraud J" first="Jean-Michel" last="Heraud">Jean-Michel Heraud</name><affiliation><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.418511.8</institution-id><institution-id institution-id-type="ISNI">0000000405527303</institution-id><institution>Virology Unit, Institut Pasteur of Madagascar,</institution></institution-wrap>Ambatofotsikely, BP 1274 Antananarivo Madagascar, Dummy_Only</nlm:aff><wicri:noCountry code="subfield">Dummy_Only</wicri:noCountry></affiliation></author></analytic><series><title level="j">Virology Journal</title><idno type="eISSN">1743-422X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Coronaviridae (classification)</term><term>Coronaviridae (genetics)</term><term>Coronaviridae (isolation & purification)</term><term>Coronaviridae Infections (veterinary)</term><term>Genes, Viral</term><term>Genetic Variation</term><term>Geography</term><term>Madagascar</term><term>Phylogeny</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Chiroptera (virologie)</term><term>Coronaviridae ()</term><term>Coronaviridae (génétique)</term><term>Coronaviridae (isolement et purification)</term><term>Gènes viraux</term><term>Géographie</term><term>Infections à Coronaviridae (médecine vétérinaire)</term><term>Madagascar</term><term>Phylogénie</term><term>Variation génétique</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Madagascar</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronaviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genes, Viral</term><term>Genetic Variation</term><term>Geography</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Coronaviridae</term><term>Gènes viraux</term><term>Géographie</term><term>Madagascar</term><term>Phylogénie</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Madagascar</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="mix" xml:lang="en"><term>Chiroptera</term><term>Coronavirus</term><term>Madagascar</term><term>Pteropodidae</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p id="Par1">Bats are amongst the natural reservoirs of many coronaviruses (CoVs) of which some can lead to severe infection in human. African bats are known to harbor a range of pathogens (e.g., Ebola and Marburg viruses) that can infect humans and cause disease outbreaks. A recent study in South Africa isolated a genetic variant closely related to MERS-CoV from an insectivorous bat. Though Madagascar is home to 44 bat species (41 insectivorous and 3 frugivorous) of which 34 are endemic, no data exists concerning the circulation of CoVs in the island’s chiropteran fauna. Certain Malagasy bats can be frequently found in close contact with humans and frugivorous bats feed in the same trees where people collect and consume fruits and are hunted and consumed as bush meat. The purpose of our study is to detect and identify CoVs from frugivorous bats in Madagascar to evaluate the risk of human infection from infected bats.</p></sec><sec><title>Methods</title><p id="Par2">Frugivorous bats belonging to three species were captured in four different regions of Madagascar. We analyzed fecal and throat swabs to detect the presence of virus through amplification of the RNA-dependent RNA polymerase (RdRp) gene, which is highly conserved in all known coronaviruses. Phylogenetic analyses were performed from positive specimens.</p></sec><sec><title>Results</title><p id="Par3">From 351 frugivorous bats, we detected 14 coronaviruses from two endemic bats species, of which 13 viruses were identified from <italic>Pteropus rufus</italic> and one from <italic>Eidolon dupreanum</italic>, giving an overall prevalence of 4.5%. Phylogenetic analysis revealed that the Malagasy strains belong to the genus <italic>Betacoronavirus</italic> but form three distinct clusters, which seem to represent previously undescribed genetic lineages.</p></sec><sec><title>Conclusions</title><p id="Par4">Our findings suggest that CoVs circulate in frugivorous bats of Madagascar, demonstrating the needs to evaluate spillover risk to human populations especially for individuals that hunt and consume infected bats. Possible dispersal mechanisms as to how coronaviruses arrived on Madagascar are discussed.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Woo, Pc" uniqKey="Woo P">PC Woo</name></author><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name></author><author><name sortKey="Huang, Y" uniqKey="Huang Y">Y Huang</name></author><author><name sortKey="Yuen, Ky" uniqKey="Yuen K">KY Yuen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Adams, Mj" uniqKey="Adams M">MJ Adams</name></author><author><name sortKey="Carstens, Eb" uniqKey="Carstens E">EB Carstens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heikkinen, T" uniqKey="Heikkinen T">T Heikkinen</name></author><author><name sortKey="Jarvinen, A" uniqKey="Jarvinen A">A Jarvinen</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Van Der Hoek, L" 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Reunion</li></settlement></list><tree><noCountry><name sortKey="Heraud, Jean Michel" sort="Heraud, Jean Michel" uniqKey="Heraud J" first="Jean-Michel" last="Heraud">Jean-Michel Heraud</name><name sortKey="Jenkins, Richard K" sort="Jenkins, Richard K" uniqKey="Jenkins R" first="Richard K" last="Jenkins">Richard K. Jenkins</name><name sortKey="Jones, Julia Pg" sort="Jones, Julia Pg" uniqKey="Jones J" first="Julia Pg" last="Jones">Julia Pg Jones</name><name sortKey="Nomenjanahary, Lalaina A" sort="Nomenjanahary, Lalaina A" uniqKey="Nomenjanahary L" first="Lalaina A" last="Nomenjanahary">Lalaina A. Nomenjanahary</name><name sortKey="Razanajatovo, Norosoa H" sort="Razanajatovo, Norosoa H" uniqKey="Razanajatovo N" first="Norosoa H" last="Razanajatovo">Norosoa H. Razanajatovo</name></noCountry><country name="France"><region name="La Réunion"><name sortKey="Wilkinson, David A" sort="Wilkinson, David A" uniqKey="Wilkinson D" first="David A" last="Wilkinson">David A. Wilkinson</name></region></country><country name="Madagascar"><noRegion><name sortKey="Razafimanahaka, Julie H" sort="Razafimanahaka, Julie H" uniqKey="Razafimanahaka J" first="Julie H" last="Razafimanahaka">Julie H. Razafimanahaka</name></noRegion><name sortKey="Goodman, Steven M" sort="Goodman, Steven M" uniqKey="Goodman S" first="Steven M" last="Goodman">Steven M. Goodman</name><name sortKey="Razafimanahaka, Julie H" sort="Razafimanahaka, Julie H" uniqKey="Razafimanahaka J" first="Julie H" last="Razafimanahaka">Julie H. Razafimanahaka</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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